PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G251700.2
Common NamePOPTR_0006s26790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 341aa    MW: 38283 Da    PI: 5.17
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G251700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-09269318453
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         R +++k  +e+Le+++++++ p+ +++  + + ++L+ ++V  WF  +Ra
  Potri.006G251700.2 269 RKRLKKVHVETLERVYRRTKRPTNTMISSIVHVTNLPRKRVVKWFEDKRA 318
                         78899999****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.442263318IPR001356Homeobox domain
SuperFamilySSF466891.67E-8265320IPR009057Homeodomain-like
SMARTSM003891.9E-4265327IPR001356Homeobox domain
PfamPF000463.8E-7269318IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-8269318IPR009057Homeodomain-like
CDDcd000862.55E-7269318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAFALSSSSA STAFQSLTSL HSSDGLHLRP SNLLLPRHSL ATSTLAFSRR RNHNSTVTSS  60
SKKKKKSVSK KEVREEDEID EDAFEALFGM LEEDLKSDDL STGDGDYENG DLSEKDLEKL  120
QRELEEALGV GGDDDVEVEM ASSVGDDVED NDGDEEEEEE GERPVMLKNW QLRRLARVLK  180
IGRRKTGIKS LAAELCLDRA IVLNLLRDPP PNLVMMSAAL PDEPAPTLVM PETKPSEIVP  240
EETREENVVK SESEMKLPVH VRQDSWFARK RLKKVHVETL ERVYRRTKRP TNTMISSIVH  300
VTNLPRKRVV KWFEDKRAGD GVPEHRNPFQ RSVPETVSSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14865RRRNHNSTVTSSSKKKKK
26170KKKKKSVSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.89180.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G251700.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308655.30.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V58e-66OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A2K2A8220.0A0A2K2A822_POPTR; Uncharacterized protein
STRINGPOPTR_0006s26790.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.16e-66overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]