PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G241700.1 | ||||||||
Common Name | POPTR_0006s25840g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 1028aa MW: 112582 Da PI: 4.7273 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Potri.006G241700.1 39 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65.9 | 7.6e-21 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l Potri.006G241700.1 91 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.5 | 8.6e-15 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ Potri.006G241700.1 143 KEAWTQQEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 185 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.705 | 34 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-16 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 40 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.33E-16 | 40 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.57E-14 | 42 | 85 | No hit | No description |
PROSITE profile | PS51294 | 33.903 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.28E-31 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-20 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-19 | 91 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.89E-17 | 93 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-28 | 95 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 141 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.727 | 142 | 192 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-15 | 142 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-13 | 143 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.53E-11 | 145 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1028 aa Download sequence Send to blast |
MESSDSLISA PVDGLVSEGV PRPKLLHGRT SGPARRSTKG QWTAEEDEIL RKAVQRFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE IIIELVNKYG PKKWSTIAQH 120 LPGRIGKQCR ERWHNHLNPS INKEAWTQQE ELALIRAHQI YGNRWAELTK FLPGRTDNAI 180 KNHWNSSVKK KLDSYLASGL LEQFQAFPLV GHQTLPMSSS SSRLHCSGDD NAQRGGAEAE 240 DISECSQEST IGGCSQSASD LGNAVFHTRE EFQLAEESGL RKEQSSSPAS CSEQYYIPEM 300 PCELGGSSNF LQQNFSHNTL TSMSSDYQFE LQELPNVSSL ELRQESSGLP THCITANESH 360 ELVNVPFQTS IGLSAPASMG NITASSVQSD QIFISDDECC RILFSEAANG GIFSSESITK 420 DSSVVDLGGG MDSSLPQSSS TQISETERSA SQSYCPPRSA VLGASCSQSF LSGPLLYSAD 480 NSTPLVYDRE PDQLMVQSFG THEQQFITTV HDSFIYTNDA INSSCDDGTG NTELQEQPYL 540 KELSKLVPVN AFPSGSDTIS SCPADEQPNV HAGGLCYEPP RFPCLDIPFL SCDLIQSGSD 600 MQQEYSPLGI RQLMMSSMNC ITPFRLWDSP SRDGSPDAVL KSAAKTFTGT PSILKKRNRD 660 LLSPLSERRG DKKLEIDMAS NLSKDFSRLD VMFDESETRN RSSLLSPSSD QEKNHESSGE 720 DKENLDPARE GAEENTGNSE DNVKQGVGDS DARSKAHPDA GAQTVKQSSE VPVEENSDDL 780 LFSPNQLGFK ADRTFGPSAR TPRNFYRKIL STLSEQASAS ESSSGNPCII ISPTVCMEKN 840 HGSHIVESTS AQPIPSSAPS ENMPDNSGNS AGTENFGIFG DTPFKRSFES PSAWKSPWFI 900 NSFVPGPRID TEISIEDIGY FMSPGDRSYD AIALMKQLSE HTAPAYADAL EVMGKDTPES 960 ILKERRRSND PDGDIENCSH LVSNVSTECR TLDFSECGTP GKKTENGKSS TAISFSSPSS 1020 YLLKSCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-71 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-71 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G241700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309557.2 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | A0A3N7GN88 | 0.0 | A0A3N7GN88_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s25840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 | Representative plant | OGRP9448 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 0.0 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G241700.1 |
Entrez Gene | 7471543 |