PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G237500.1
Common NamePOPTR_0006s25390g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92883.3 Da    PI: 6.3469
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G237500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-192179357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Potri.006G237500.1 21 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79
                        5679*****************************************************97 PP
2START183.98.8e-581663732204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++++++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++++s+g  g+
  Potri.006G237500.1 166 IAEETLAQFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVVNALSTGsgGT 255
                         7899******************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+   ++++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++
  Potri.006G237500.1 256 IELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSV 346
                         ***********************************************99999*************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s++  ++kt++a+l++++
  Potri.006G237500.1 347 PEVLRPLYESSTLLAQKTTMAALRHLR 373
                         ***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6291680IPR001356Homeobox domain
SMARTSM003895.2E-161884IPR001356Homeobox domain
SuperFamilySSF466894.02E-172084IPR009057Homeodomain-like
CDDcd000861.68E-162181No hitNo description
PfamPF000461.5E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-182379IPR009057Homeodomain-like
CDDcd146861.16E-673112No hitNo description
PROSITE profilePS5084825.633156384IPR002913START domain
CDDcd088759.12E-81160374No hitNo description
SMARTSM002346.5E-44165375IPR002913START domain
SuperFamilySSF559611.65E-38165376No hitNo description
Gene3DG3DSA:3.30.530.201.6E-24165371IPR023393START-like domain
PfamPF018522.0E-55166373IPR002913START domain
PfamPF086701.4E-50703843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MMAVSSTCKD GSTKITMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSH  60
IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY  120
FRQQTQNATN LATTDTSCES VVTSGQHHLT PQHPPRDASP AGLLSIAEET LAQFLSKATG  180
TAVEWVQMPG MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK DRPSWFRDCR  240
AVDVVNALST GSGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV VCERSLNNTQ  300
NGPSMPPTQH FVRAEMLPSG YLIRPCEGGG SIIHVVDHMD LEPWSVPEVL RPLYESSTLL  360
AQKTTMAALR HLRQVSQEVS QPNVTGWGRR PAALRALSQR LSKGFNEAVN GFADEGWSML  420
ESDGIDDVTV LVNSSPAKMM GVNFSYANGF PSMSNAVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADSGI DAYAAAAVKA GPCSLPMSRA GNFGGQVILP LAHTIEHEEA STSFMEVIKL  540
ENMGYREDML MPGDVFLLQL CSGVDENAVG TCAELIFAPI DASFSDDAPI IPSGFRIIPL  600
DSGMDASSPN RTLDLASALE VGPAGNRASG DLSGRSGCTK SVMTIAFQFA FEMHLQENVT  660
SMARQYVRSI IASVQRVALA LSPSHFGSHA GFRPPPGTPE AHTLARWICE SYRCYLGVEL  720
LKNEGSESIL KTLWHHSDAL MCCSLKTLPV FTFANQAGLD MLETTLVALQ DITLEKIFDD  780
NGRKTLYSEF PQIMQQGFMC LQGGICLSSM GRPVSYERAV AWKVLNEEES AHCICFMFIN  840
WSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.171820.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G237500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196230.0AY919623.1 Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459734.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_024459736.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_024459737.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A2K2A7960.0A0A2K2A796_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]