PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.006G234200.1 | ||||||||
Common Name | POPTR_0006s25060g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 32910.1 Da PI: 5.7164 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ + + +G+g +W + +++ g++R++k+c++rw++yl Potri.006G234200.1 14 RGPWSPEEDATLKSYLETHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + q+G++ W++Ia+ ++ gRt++++k++w++ Potri.006G234200.1 69 GGFTEEEDNIICTLYSQMGSR-WSLIAAQLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.66 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.31E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.45E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.729 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.20E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLKSYLE THGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC TLYSQMGSRW SLIAAQLPGR TDNDVKNYWN TKLKKKILAG 120 KISLTIKNNP INAPVNVANI PAIPCSTSPI LYVPKAETES SVTFSDHYSL TQISGTLPAL 180 SDIGYEPIIN STAQNLSPNQ FQFSSFPGVI DMSEFSMNST HIVSPSQEGS SISDSSSLAM 240 DNKGLSVPST NGGLEDVGIF MDSEPGFPSD FFNGLLLQDK ASEVATNCYQ YFAGFGYVDI 300 KP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.006G234200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ459145 | 4e-42 | AJ459145.1 Gossypium hirsutum partial myb117 gene, clone pGhMYB117. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309524.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | B9HE03 | 0.0 | B9HE03_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s25060.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-76 | myb domain protein 84 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.006G234200.1 |
Entrez Gene | 7462280 |