PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G230500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 25738.9 Da PI: 9.8194 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.4e-14 | 101 | 145 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Potri.006G230500.1 101 PWTEEEHRIFLLGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 145 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.532 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 2.9E-4 | 3 | 21 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 16.731 | 94 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.06E-18 | 96 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-18 | 97 | 149 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.6E-11 | 98 | 148 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-11 | 100 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.79E-10 | 101 | 146 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 101 | 145 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006338 | Biological Process | chromatin remodeling | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0035066 | Biological Process | positive regulation of histone acetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0004402 | Molecular Function | histone acetyltransferase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRKCSHCGN VGHNSRTCTT TQKESLRLFG VQLDIPASSS SPAMKKSFSV GSLPSSSTTP 60 SSSTSSNSPH VNTGDEFYLL SNGYLSDGQV GRTPERKKSV PWTEEEHRIF LLGLEKLGKG 120 DWRGISRNFV TTRTPTQVAS HAQKYFLRQN SLTKRKRRPS LFDVGNGTSS IQPASASIPE 180 VIIEGNIFGG LPLMSTVASP ICTSFSELGL GDHHSVLLPC SSPDEHVSSK TSSTPAPSKA 240 * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G230500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459356.1 | 1e-176 | transcription factor MYBS3 | ||||
Swissprot | Q7XC57 | 2e-50 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A2K2A6V3 | 1e-174 | A0A2K2A6V3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24660.1 | 1e-126 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 | Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-52 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G230500.1 |
Publications ? help Back to Top | |||
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