PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G229200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 356aa MW: 39445.5 Da PI: 9.0918 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.2 | 5.2e-19 | 222 | 255 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + Potri.006G229200.1 222 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 255 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.6E-20 | 216 | 267 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-12 | 216 | 256 | No hit | No description |
PROSITE profile | PS50114 | 12.848 | 216 | 252 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 220 | 255 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.83E-14 | 221 | 253 | No hit | No description |
Pfam | PF00320 | 1.1E-16 | 222 | 255 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 222 | 247 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MTDQMKKEKS WAIFPLTDVP CLLFFILFHI VHLYWTAGAA AKLSLPHPPS PSMTPAYLNP 60 ASSSFPFVDL REEQNLQLFL SPHQAATSLS GPTNFFNTSA HDHQRETKPG ESRQHDNQEV 120 DMYNISHGGS SSSFQPEVND HNYNSNFHNL SSSKMEDGAE ESGESSVKWM PSKMRLMQKM 180 TNSNCSETDH MPMKFMLKFH NQQYQNNEIN SSSNSNSNIR VCSDCNTTST PLWRSGPRGP 240 KSLCNACGIR QRKARRAMAA AAAAANGTVI AIEASSSTRS TKVNNKVKKS RTNHVSQNKK 300 LSKPPESSLQ SQKKLCFKNL ALSLSKNPAL QQVLPHDVEE AAILLMELSC GFIHS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.17499 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G229200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147614 | 0.0 | EF147614.1 Populus trichocarpa clone WS0123_N07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308561.2 | 0.0 | GATA transcription factor 21 | ||||
TrEMBL | A9PGX1 | 0.0 | A9PGX1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24560.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 8e-29 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G229200.1 |