PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G227600.3
Common NamePOPTR_0006s24410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 462aa    MW: 50996.2 Da    PI: 9.42
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G227600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0580100323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C++C+k F+r  nL+ H r H
  Potri.006G227600.3  80 CEICNKGFKRDQNLQLHRRGH 100
                         *******************88 PP
2zf-C2H212.60.0004154176123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H + +
  Potri.006G227600.3 154 WKCEKCSKRYAVQSDWKAHSKIC 176
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.4E-677100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.32E-777100No hitNo description
PROSITE profilePS5015710.84578100IPR007087Zinc finger, C2H2
SMARTSM003550.05178100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355100119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-5142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.32E-7149174No hitNo description
SMARTSM00355130154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MMKGLVMDEN MSNLTSASGE VSASSGSRIE TGAKHPQHSF DSTNQPPPKK KKNLPGNPDP  60
DAEVIALSPN SLQTTNRFLC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEVRKKVYV  120
CPEVTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSKICGTRE  180
YRCDCGTLFS RRDSFITHRA FCDTLAEESA RSMTVLSSQQ PGSSASHLMN LQALSVKREQ  240
DQNQYLFNPR PDSIPPWLAC PPIGEAGPDQ SFLQHGNPSP NPTVLPPFQP SSTASPHMSA  300
TALLQKAAQM GVTVSKPSPS PATAAILRPH QGHMSDHQNP VHDMMSSLSS ASGFDGSSFD  360
NEDFNGMLNP KRDSSNFQEI LSKSTESRFI RSDAASGSHH GGGNDGLTRD FLGLKAFPHK  420
DFLNLPAGFD HISPSTYGQR NQNLPPPWQG SSMDFQLYNK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35150217369Zinc finger protein JACKDAW
5b3h_F6e-35150217369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104116KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G227600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2317691e-156CU231769.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382013.10.0protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-117IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLU5G8R00.0U5G8R0_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24410.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-102indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]