PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G227600.2

Common Name

POPTR_0006s24410g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 530aa MW: 57652.5 Da PI: 8.6211

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G227600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	80	100	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F+r nL+ H r H Potri.006G227600.2 80 CEICNKGFKRDQNLQLHRRGH 100 *******************88 PP
2	zf-C2H2	12.4	0.00048	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Potri.006G227600.2 154 WKCEKCSKRYAVQSDWKAHSKIC 176 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.05E-7	77	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	78	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.051	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.7E-5	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.05E-7	149	174	No hit	No description
SMART	SM00355	130	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MMKGLVMDEN MSNLTSASGE VSASSGSRIE TGAKHPQHSF DSTNQPPPKK KKNLPGNPDP 60 DAEVIALSPN SLQTTNRFLC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEVRKKVYV 120 CPEVTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSKICGTRE 180 YRCDCGTLFS RRDSFITHRA FCDTLAEESA RSMTVLSSQQ PGSSASHLMN LQALSVKREQ 240 DQNQYLFNPR PDSIPPWLAC PPIGEAGPGP PQINLSSQLF PAHLDQSFLQ HGNPSPNPTV 300 LPPFQPSSTA SPHMSATALL QKAAQMGVTV SKPSPSPATA AILRPHQGHM SDHQNPGFGS 360 TLPATSTANP GLFFTSREEM GSGFGHGLAS LEDKAGTVTS GIMEYLAASD GGGTSLVHDM 420 MSSLSSASGF DGSSFDNEDF NGMLNPKRDS SNFQEILSKS TESRFIRSDA ASGSHHGGGN 480 DGLTRDFLGL KAFPHKDFLN LPAGFDHISP STYGQRNQNL PPPWQESLQ*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MMKGLVMDEN MSNLTSASGE VSASSGSRIE TGAKHPQHSF DSTNQPPPKK KKNLPGNPDP  60
DAEVIALSPN SLQTTNRFLC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEVRKKVYV  120
CPEVTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSKICGTRE  180
YRCDCGTLFS RRDSFITHRA FCDTLAEESA RSMTVLSSQQ PGSSASHLMN LQALSVKREQ  240
DQNQYLFNPR PDSIPPWLAC PPIGEAGPGP PQINLSSQLF PAHLDQSFLQ HGNPSPNPTV  300
LPPFQPSSTA SPHMSATALL QKAAQMGVTV SKPSPSPATA AILRPHQGHM SDHQNPGFGS  360
TLPATSTANP GLFFTSREEM GSGFGHGLAS LEDKAGTVTS GIMEYLAASD GGGTSLVHDM  420
MSSLSSASGF DGSSFDNEDF NGMLNPKRDS SNFQEILSKS TESRFIRSDA ASGSHHGGGN  480
DGLTRDFLGL KAFPHKDFLN LPAGFDHISP STYGQRNQNL PPPWQESLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	150	217	3	69	Zinc finger protein JACKDAW
5b3h_F	1e-34	150	217	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	116	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G227600.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231769	1e-164	CU231769.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024459849.1	0.0	protein indeterminate-domain 7 isoform X2
Swissprot	Q8H1F5	1e-116	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2K2A6K8	0.0	A0A2K2A6K8_POPTR; Uncharacterized protein
STRING	POPTR_0006s24410.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-101	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Potri.006G227600.2
Entrez Gene	7462254

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]