PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G227600.1 | ||||||||
Common Name | POPTR_0006s24410g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 538aa MW: 58594.6 Da PI: 8.8646 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 80 | 100 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F+r nL+ H r H Potri.006G227600.1 80 CEICNKGFKRDQNLQLHRRGH 100 *******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00049 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Potri.006G227600.1 154 WKCEKCSKRYAVQSDWKAHSKIC 176 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 77 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.15E-7 | 77 | 100 | No hit | No description |
PROSITE profile | PS50157 | 10.845 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.051 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 119 | 149 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.8E-5 | 142 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.15E-7 | 149 | 174 | No hit | No description |
SMART | SM00355 | 130 | 154 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MMKGLVMDEN MSNLTSASGE VSASSGSRIE TGAKHPQHSF DSTNQPPPKK KKNLPGNPDP 60 DAEVIALSPN SLQTTNRFLC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEVRKKVYV 120 CPEVTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSKICGTRE 180 YRCDCGTLFS RRDSFITHRA FCDTLAEESA RSMTVLSSQQ PGSSASHLMN LQALSVKREQ 240 DQNQYLFNPR PDSIPPWLAC PPIGEAGPGP PQINLSSQLF PAHLDQSFLQ HGNPSPNPTV 300 LPPFQPSSTA SPHMSATALL QKAAQMGVTV SKPSPSPATA AILRPHQGHM SDHQNPGFGS 360 TLPATSTANP GLFFTSREEM GSGFGHGLAS LEDKAGTVTS GIMEYLAASD GGGTSLVHDM 420 MSSLSSASGF DGSSFDNEDF NGMLNPKRDS SNFQEILSKS TESRFIRSDA ASGSHHGGGN 480 DGLTRDFLGL KAFPHKDFLN LPAGFDHISP STYGQRNQNL PPPWQGSSMD FQLYNKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 150 | 217 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 150 | 217 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 116 | KLKQRTNKEVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G227600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU231769 | 1e-156 | CU231769.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006382013.1 | 0.0 | protein indeterminate-domain 7 isoform X1 | ||||
Swissprot | Q8H1F5 | 1e-115 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | U5G8R0 | 0.0 | U5G8R0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-101 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G227600.1 |
Entrez Gene | 7462254 |
Publications ? help Back to Top | |||
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