PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G224100.1 | ||||||||
Common Name | POPTR_0006s24050g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 166aa MW: 18800.7 Da PI: 5.3797 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.9 | 1.5e-31 | 104 | 162 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver+++dp++v++tYeg H+h+ Potri.006G224100.1 104 LDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDRDDPRYVITTYEGIHTHQ 162 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-34 | 90 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-29 | 97 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.481 | 99 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-37 | 104 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-25 | 105 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MSSPKFSTQQ DTPELSDFAH DQLSNFELSE FLTFDEWIAL EDAPSSIASS YACNPVYRAH 60 VVGESGGSSS PREELSGGEG EEGREKKEAK ERVAFKTKSE IEILDDGYKW RKYGKKMVKN 120 SPNPRNYYRC SVEGCPVKKR VERDRDDPRY VITTYEGIHT HQSFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 94 | 161 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 94 | 161 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G224100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308538.1 | 1e-121 | probable WRKY transcription factor 50 isoform X1 | ||||
Swissprot | Q8VWQ5 | 5e-45 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | B9HDB0 | 1e-119 | B9HDB0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24050.1 | 1e-120 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-43 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G224100.1 |
Entrez Gene | 7462238 |
Publications ? help Back to Top | |||
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