PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G208100.2
Common NamePOPTR_0006s22460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 354aa    MW: 39591.3 Da    PI: 5.4895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G208100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.36.6e-33116218199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k ltpsdv+k++rlv+pk++ae++    g +  ++  l++edesgr W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++++
  Potri.006G208100.2 116 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsGDSVDKGLLLSFEDESGRYWKFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVLFERHRT 206
                         99***************************966667889*************************************************9888 PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                         ++ +l+++++r+
  Potri.006G208100.2 207 DGDRLFIGWRRR 218
                         9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-42111225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-31112219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-28114208No hitNo description
PfamPF023626.1E-30116218IPR003340B3 DNA binding domain
SMARTSM010196.9E-26116219IPR003340B3 DNA binding domain
PROSITE profilePS5086314.381116219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSINHFSTDL QETLSWWAQQ HQQQQPIMEP NPNASSSTPN EPPNISNPNS SWPPHHSWLN  60
PYNTAQQPSS MFLPQNPTLN FNLNEEDDED QDHEQQQQDE TQQEQEVLVL DKEPMFEKPL  120
TPSDVGKLNR LVIPKQHAEK YFPLSGDSVD KGLLLSFEDE SGRYWKFRYS YWNSSQSYVL  180
TKGWSRYVKE KQLDAGDVVL FERHRTDGDR LFIGWRRRGE SGSNSGVMVQ GSGGGVWSRG  240
ILYPSSSSGP HHLSSSNIQH DLGANVTAAN VPYQPYCLHA GSIAQNQTTP LGNSKRLRLF  300
GVNLECQLDG SEPSTPDGSS VSSLQGPGHP QFYSQSSYSS NSTHGQMVSH MTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-491112223117B3 domain-containing transcription factor NGA1
5os9_B3e-491112223117B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G208100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166720.0AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458719.10.0B3 domain-containing protein At2g36080 isoform X2
SwissprotQ8GYJ25e-71Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLU5GBS20.0U5GBS2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s22460.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.19e-72B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]