PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G207700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 412aa MW: 44005.2 Da PI: 7.7235 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 24 | 1.2e-07 | 33 | 100 | 22 | 88 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg 88 + ++a c ++ L eLG+ + + +i WL a p + +++ +++sa+ c ++++ s++++ ++ Potri.006G207700.1 33 IMVPAMCSTAIYRLRGELGLGSCGAAIHWLVHHARPDLIPAPEPptKTKSAKTC-PSRKTDSVDHDPIP 100 668**************************************9984455555555.55555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56317 | 3.27E-64 | 126 | 404 | IPR003010 | Carbon-nitrogen hydrolase |
Gene3D | G3DSA:3.60.110.10 | 8.2E-67 | 127 | 402 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE profile | PS50263 | 38.932 | 128 | 411 | IPR003010 | Carbon-nitrogen hydrolase |
CDD | cd07564 | 7.24E-108 | 128 | 400 | No hit | No description |
Pfam | PF00795 | 3.0E-55 | 129 | 399 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE pattern | PS00920 | 0 | 160 | 175 | IPR000132 | Nitrilase/cyanide hydratase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MEESTKNAEA KKEKKRGHRP LIVAQSPAEK AHIMVPAMCS TAIYRLRGEL GLGSCGAAIH 60 WLVHHARPDL IPAPEPPTKT KSAKTCPSRK TDSVDHDPIP KPACMARADG DTPVSDFPAT 120 ARAARSPVRA TVVQASTVVF DTPATLDKAE RLIAGAAAYG SQLVVFPEAF VGGYPRSVRF 180 DATNPTEGDD GLQRYYASAI DVPGPEVERL AKIAGKYKVH LVMGVVERAG FYLYSTMLFF 240 DSQGQHLGQH RKITLVASES AVWNSGGKST LPIYETSIGK IGGLTCWDNK WPLLRTELYD 300 KGVEIYCAPT ADAGEIWKAS MIHIALEGGC FVLSANQFCR RRDYPFPPGD SNGDASLDAI 360 TCAGGSVIIS PSGTILAGPS YHGECLISAD LDLGDIILAK TKYGGIRTMS G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wuy_A | 6e-37 | 128 | 402 | 16 | 289 | Nitrilase |
3wuy_B | 6e-37 | 128 | 402 | 16 | 289 | Nitrilase |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, cotyledons, leaves and flowers. {ECO:0000269|PubMed:10574458}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G207700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU285280 | 2e-48 | GU285280.1 Populus balsamifera isolate KUU07 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285281 | 2e-48 | GU285281.1 Populus balsamifera isolate KUU07 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285282 | 2e-48 | GU285282.1 Populus balsamifera isolate MGR10 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285283 | 2e-48 | GU285283.1 Populus balsamifera isolate MGR10 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285284 | 2e-48 | GU285284.1 Populus balsamifera isolate NWL07 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285285 | 2e-48 | GU285285.1 Populus balsamifera isolate NWL07 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285286 | 2e-48 | GU285286.1 Populus balsamifera isolate POR11 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285287 | 2e-48 | GU285287.1 Populus balsamifera isolate POR11 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285288 | 2e-48 | GU285288.1 Populus balsamifera isolate RNA13 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285289 | 2e-48 | GU285289.1 Populus balsamifera isolate RNA13 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285290 | 2e-48 | GU285290.1 Populus balsamifera isolate STL13 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285291 | 2e-48 | GU285291.1 Populus balsamifera isolate STL13 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285292 | 2e-48 | GU285292.1 Populus balsamifera isolate STO11 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285293 | 2e-48 | GU285293.1 Populus balsamifera isolate STO11 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285294 | 2e-48 | GU285294.1 Populus balsamifera isolate WHR03 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285295 | 2e-48 | GU285295.1 Populus balsamifera isolate WHR03 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285296 | 2e-48 | GU285296.1 Populus balsamifera isolate LOV02 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285297 | 2e-48 | GU285297.1 Populus balsamifera isolate LOV02 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285298 | 2e-48 | GU285298.1 Populus balsamifera isolate GIL14 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285299 | 2e-48 | GU285299.1 Populus balsamifera isolate GIL14 haplotype B nitrilase 4 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459262.1 | 0.0 | bifunctional nitrilase/nitrile hydratase NIT4B isoform X2 | ||||
Swissprot | Q42966 | 1e-130 | NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B | ||||
TrEMBL | A0A2K2A5G6 | 0.0 | A0A2K2A5G6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s22420.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4583 | 8 | 8 | Representative plant | OGRP1835 | 2 | 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G207700.1 |
Publications ? help Back to Top | |||
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