PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G202500.1

Common Name

POPTR_0006s21700g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 289aa MW: 31912.1 Da PI: 6.7757

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G202500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.8	4.2e-37	14	68	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Potri.006G202500.1 14 SCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68 7***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	1	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.714	13	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	14	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
METGWKGNSE ISPSCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRGKS LRLSSNDHSK SFGCGGLPNN SIRHPHSHKG NSSIESSSSP MIPDGSHIDL 120 ALVYAKFLNP QQDSKSGCEV PEFTSEFDPS LIFTNILNTN LEPSSQLSEE NGPAGCLTTS 180 DFSTKAPLSD NDHLMYYYSL DSAHKHQDHQ DRTKQCTSND TSSFHLPPLP GQDTASQEIL 240 WSNSHLMGNH NLEMSQQPVL GPETQDPNLL FGNWSPFDLS SDDTFSRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G202500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309254.1	0.0	dof zinc finger protein DOF3.5
TrEMBL	B9H9K8	0.0	B9H9K8_POPTR; Uncharacterized protein
STRING	POPTR_0006s21700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-55	Dof family protein

Link Out ? help Back to Top
Phytozome	Potri.006G202500.1
Entrez Gene	7497649