PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G201900.5
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 282aa    MW: 30979.2 Da    PI: 9.5684
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G201900.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.72.6e-30115170258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          p+YVNaKQy++I++RR++Rak++ e+kl  ++rkpy+h SRh hA+rRpRg+gGrF
  Potri.006G201900.5 115 VPIYVNAKQYHGIIRRRKSRAKAALENKL-PRNRKPYMHRSRHLHAMRRPRGCGGRF 170
                         59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-34112173IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.783113173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-22116138IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-26116170IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-22147170IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEFWYLVDRS AIQVQIYPPI VFSRHFQYDY LLTIKVISHS GDCKPSGGGQ KSVQGAISLQ  60
TALPEYYAHF DLGFGQPVIC AKYPVVDQCY GLFSTFGPQI SGRIMLPMST TTDDVPIYVN  120
AKQYHGIIRR RKSRAKAALE NKLPRNRKPY MHRSRHLHAM RRPRGCGGRF LNTKELNDGK  180
GITEAKKAGD FQLSQPTGSQ SSEVLESGGA TLNSMEANCG GSNLSGSEVT SLYNRVDFDR  240
FPFNHHGPTV HGFSGMDGGH GIGIGMPSKW IAAADNCSNL K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-18114177265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G201900.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101320.0AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381938.11e-180nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_006381939.11e-180nuclear transcription factor Y subunit A-2 isoform X3
RefseqXP_024459808.11e-180nuclear transcription factor Y subunit A-10 isoform X1
SwissprotQ9M9X41e-48NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A2K2A5680.0A0A2K2A568_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21640.11e-180(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-44nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]