PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G201900.3 | ||||||||
Common Name | POPTR_0006s21640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YA | ||||||||
Protein Properties | Length: 260aa MW: 28133 Da PI: 9.8346 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.9 | 2.3e-30 | 93 | 148 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RR++Rak++ e+kl ++rkpy+h SRh hA+rRpRg+gGrF Potri.006G201900.3 93 VPIYVNAKQYHGIIRRRKSRAKAALENKL-PRNRKPYMHRSRHLHAMRRPRGCGGRF 148 59***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-34 | 90 | 151 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.783 | 91 | 151 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.7E-27 | 94 | 148 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-22 | 94 | 116 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-22 | 125 | 148 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MKCSTGLTCL HLSWPKRPGD CKPSGGGQKS VQGAISLQTA LPEYYAHFDL GFGQPVICAK 60 YPVVDQCYGL FSTFGPQISG RIMLPMSTTT DDVPIYVNAK QYHGIIRRRK SRAKAALENK 120 LPRNRKPYMH RSRHLHAMRR PRGCGGRFLN TKELNDGKGI TEAKKAGDFQ LSQPTGSQSS 180 EVLESGGATL NSMEANCGGS NLSGSEVTSL YNRVDFDRFP FNHHGPTVHG FSGMDGGHGI 240 GIGMPSKWIA AADNCSNLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-19 | 94 | 153 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G201900.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210132 | 0.0 | AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381939.1 | 0.0 | nuclear transcription factor Y subunit A-2 isoform X3 | ||||
Swissprot | Q9M9X4 | 7e-49 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | U5GBP6 | 0.0 | U5GBP6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s21640.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 3e-44 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G201900.3 |
Entrez Gene | 7479478 |
Publications ? help Back to Top | |||
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