PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G201900.2 | ||||||||
Common Name | POPTR_0006s21640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YA | ||||||||
Protein Properties | Length: 319aa MW: 34380.9 Da PI: 9.4979 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.4 | 3.2e-30 | 152 | 207 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RR++Rak++ e+kl ++rkpy+h SRh hA+rRpRg+gGrF Potri.006G201900.2 152 VPIYVNAKQYHGIIRRRKSRAKAALENKL-PRNRKPYMHRSRHLHAMRRPRGCGGRF 207 59***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-34 | 149 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.783 | 150 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-22 | 153 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-26 | 153 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-22 | 184 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAMKTFYLKE HEGSVHNPNG QLSTVPWWTA FGSQAVNGES CGLLKALPIE QPAGGGETAT 60 KLARMGTEQG LDKGNITQFT IFPGGGQKSV QGAISLQTAL PEYYAHFDLG FGQPVICAKY 120 PVVDQCYGLF STFGPQISGR IMLPMSTTTD DVPIYVNAKQ YHGIIRRRKS RAKAALENKL 180 PRNRKPYMHR SRHLHAMRRP RGCGGRFLNT KELNDGKGIT EAKKAGDFQL SQPTGSQSSE 240 VLESGGATLN SMEANCGGSN LSGSEVTSLY NRVDFDRFPF NHHGPTVHGF SGMDGGHGIG 300 IGMPSKWIAA ADNCSNLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-19 | 153 | 212 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G201900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210132 | 0.0 | AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381938.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
Refseq | XP_024459808.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
TrEMBL | U5G8I2 | 0.0 | U5G8I2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s21640.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 2e-52 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G201900.2 |
Entrez Gene | 7479478 |