PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G193700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 327aa    MW: 36355.9 Da    PI: 9.7234
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G193700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-18171225256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Potri.006G193700.1 171 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 225
                         678899***********************************************98 PP
2HD-ZIP_I/II126.79.8e-41171261192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l
  Potri.006G193700.1 171 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTKENRRLQKELQELR-AL 260
                         69*************************************************************************************9.55 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Potri.006G193700.1 261 K 261
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.6E-547137IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.15E-17166228IPR009057Homeodomain-like
PROSITE profilePS5007116.73167227IPR001356Homeobox domain
SMARTSM003896.0E-15169231IPR001356Homeobox domain
CDDcd000862.88E-15171228No hitNo description
Gene3DG3DSA:1.10.10.605.0E-17171225IPR009057Homeodomain-like
PfamPF000462.6E-15171225IPR001356Homeobox domain
PROSITE patternPS000270202225IPR017970Homeobox, conserved site
SMARTSM003404.2E-25227270IPR003106Leucine zipper, homeobox-associated
PfamPF021833.6E-11227261IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MELALSLGDT SKPFKFLDKT PKLSSKDLGF CMGLGSGFTA STRSHDKLGS HENNHQEDER  60
RVSSDPPLQL VLLPFSPVPR RHQPPSKTRF PWLTDNLVSE PGSTEGSGRG FDVNRLSMDD  120
ADEGAALSSP NSAASSFQMD FGIRSGRGNK RDLEAIEASR ASDDEENGLT RKKLRLSKDQ  180
SAFLEESFKE HSTLNPKQKL ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC  240
ETLTKENRRL QKELQELRAL KTSQPFYMQL PATTLTMCPS CERVATTTTT TNPSTSTTTS  300
KTLSLPAKPR LFPSSHGQVQ AHQAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175TRKKLRL
2219227RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.116100.0bud
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G193700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2629441e-106AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459020.10.0homeobox-leucine zipper protein HAT14
SwissprotP466651e-103HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2K2A4R10.0A0A2K2A4R1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-83homeobox from Arabidopsis thaliana