PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G191900.1 | ||||||||
Common Name | POPTR_0006s20620g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 235aa MW: 24732.1 Da PI: 10.3043 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.9e-07 | 36 | 60 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H Potri.006G191900.1 36 KLKPCTKFFSTAGCPFGESCHFLHH 60 6689********************6 PP | |||||||
2 | zf-CCCH | 34.9 | 2.7e-11 | 201 | 225 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G rC+FaHg Potri.006G191900.1 201 YKTKLCDNFAK-GSCTFGQRCHFAHG 225 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.53 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.643 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 35 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-5 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-8 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 5.8E-9 | 107 | 177 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 12.852 | 108 | 172 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 2.1E-14 | 109 | 177 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 1.1E-12 | 109 | 177 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.47E-12 | 110 | 173 | No hit | No description |
Pfam | PF00013 | 1.0E-10 | 110 | 174 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-16 | 198 | 231 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-9 | 199 | 231 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-7 | 200 | 226 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.014 | 200 | 227 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-9 | 201 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDTRKRGRPD FKTNGFGGFK KSKQEMDPLS TGVGSKLKPC TKFFSTAGCP FGESCHFLHH 60 VPGGYNAVTQ MMNLGPTVTP PSRSVPGHLG GRVEQPSPGP ATSFGVFATT TRISVNASLA 120 GFIIGKGGVH SIQICHQTGV KLSIKEHETN PNLKNIELEG SFEQIAQASK MVEELVKVNS 180 AKAAAKTSGG RGGHANPGSN YKTKLCDNFA KGSCTFGQRC HFAHGAAELR KTAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G191900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146224 | 5e-44 | BT146224.1 Lotus japonicus clone JCVI-FLLj-17O9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033221.1 | 1e-135 | PREDICTED: zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q9FG30 | 8e-95 | C3H52_ARATH; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | U5FQC5 | 1e-133 | U5FQC5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s20620.1 | 1e-172 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-97 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G191900.1 |
Entrez Gene | 7479532 |
Publications ? help Back to Top | |||
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