PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G184800.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 519aa    MW: 56511.1 Da    PI: 7.014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G184800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.63.4e-25205261259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e+s++ ++v+ei+++g H h+
  Potri.006G184800.2 205 PDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGRVIEIVNKGMHSHP 261
                         5********************************98.*********************8 PP
2WRKY986.2e-31378434359
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++v+itY+g H+h+
  Potri.006G184800.2 378 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNAVIITYKGVHDHD 434
                         9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.076199263IPR003657WRKY domain
SuperFamilySSF1182905.23E-19200262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-18200261IPR003657WRKY domain
SMARTSM007745.9E-23204262IPR003657WRKY domain
PfamPF031061.1E-16206261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-31362436IPR003657WRKY domain
PROSITE profilePS5081131.881371436IPR003657WRKY domain
SuperFamilySSF1182903.4E-27372436IPR003657WRKY domain
SMARTSM007742.5E-35376435IPR003657WRKY domain
PfamPF031062.0E-23378433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAGSESFEAL EVQNNEQKRQ GNEQNNGNFV EEEELEGDYI EEEEESQLSE LQQLVELPSS  60
QVEEEMRDGQ VETLTVVPSS STAILSKEND QHVGLKGNSA LKTHVEAEFK EQVGLSHQEV  120
LGSVTAQSAK AQTQYQLPPS ACPTSSSELS LTSVTQPISS APSPTPPEKR LSPPEVKNAC  180
IPEAGHQSSA KLKALHVPVA RTSIPDGYNW RKYGQKQVKS PKGSRSYYKC TYSDCCAKKI  240
ECSDHSGRVI EIVNKGMHSH PPRKNNSTRE SRSGLSVGPI LQTTVTERTV RMLKDSEPVT  300
LSIEPAQETP TVSERKRQSS SSSDENKETQ IKEEDVGEPE PKRRLKKGNL ECSKANLKPG  360
KKTKFVVHAA GDVGISGDGY RWRKYGQKMV KGNPHPRNYY RCTSAGCPVR KHIETAVDNT  420
NAVIITYKGV HDHDMPVPKK RHGPPSAPPA AAAAAPASLS SLPIKKTDTL QNQVASTQWS  480
VGKEGELTGE TLDLGGEKEA AIESARTLLS IGFEIKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-26363436174WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.3170.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G184800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1481810.0EF148181.1 Populus trichocarpa clone WS0128_G14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460430.10.0probable WRKY transcription factor 32 isoform X2
SwissprotP595831e-132WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2K2A4850.0A0A2K2A485_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11630.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-115WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]