PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G184800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 523aa    MW: 56925.5 Da    PI: 6.7482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G184800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.63.4e-25209265259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e+s++ ++v+ei+++g H h+
  Potri.006G184800.1 209 PDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGRVIEIVNKGMHSHP 265
                         5********************************98.*********************8 PP
2WRKY986.3e-31382438359
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++v+itY+g H+h+
  Potri.006G184800.1 382 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNAVIITYKGVHDHD 438
                         9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.076203267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-18204265IPR003657WRKY domain
SuperFamilySSF1182905.23E-19204266IPR003657WRKY domain
SMARTSM007745.9E-23208266IPR003657WRKY domain
PfamPF031061.1E-16210265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-31366440IPR003657WRKY domain
PROSITE profilePS5081131.881375440IPR003657WRKY domain
SuperFamilySSF1182903.4E-27376440IPR003657WRKY domain
SMARTSM007742.5E-35380439IPR003657WRKY domain
PfamPF031062.0E-23382437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAGSESFEAL EVQNNEQKRQ GNEQNNGNFV EEEELEGDYI EEEEESQLSE LQQLVELPSS  60
QVEEEMRDGQ VETLTVVPSS STAILSKEND QHVDDLAGLK GNSALKTHVE AEFKEQVGLS  120
HQEVLGSVTA QSAKAQTQYQ LPPSACPTSS SELSLTSVTQ PISSAPSPTP PEKRLSPPEV  180
KNACIPEAGH QSSAKLKALH VPVARTSIPD GYNWRKYGQK QVKSPKGSRS YYKCTYSDCC  240
AKKIECSDHS GRVIEIVNKG MHSHPPRKNN STRESRSGLS VGPILQTTVT ERTVRMLKDS  300
EPVTLSIEPA QETPTVSERK RQSSSSSDEN KETQIKEEDV GEPEPKRRLK KGNLECSKAN  360
LKPGKKTKFV VHAAGDVGIS GDGYRWRKYG QKMVKGNPHP RNYYRCTSAG CPVRKHIETA  420
VDNTNAVIIT YKGVHDHDMP VPKKRHGPPS APPAAAAAAP ASLSSLPIKK TDTLQNQVAS  480
TQWSVGKEGE LTGETLDLGG EKEAAIESAR TLLSIGFEIK PC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-26367440174WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.3170.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G184800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1481810.0EF148181.1 Populus trichocarpa clone WS0128_G14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460429.10.0probable WRKY transcription factor 32 isoform X1
SwissprotP595831e-132WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2K2A4990.0A0A2K2A499_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Representative plantOGRP10318610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-115WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]