PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G179900.1
Common NamePOPTR_0006s19360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 306aa    MW: 34849.7 Da    PI: 8.7569
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G179900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.6e-124399155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Potri.006G179900.1 43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEVAAHAYDLAALKYWG 99
                        57*******************99998898888888********************98 PP
2AP240.66.4e-13139181146
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaa 46 
                         ++y+GV++++ +g W+A+I   +   g +k+ +lg++ t eeAa+a+
  Potri.006G179900.1 139 PKYRGVSRHHHNGGWEARIGRvF---G-NKYLYLGTYATQEEAAAAY 181
                         79****************99966...3.6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-1643109No hitNo description
PfamPF008472.5E-84399IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1543109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-1344108IPR001471AP2/ERF domain
SMARTSM003801.0E-1944113IPR001471AP2/ERF domain
PROSITE profilePS5103218.34744107IPR001471AP2/ERF domain
PRINTSPR003675.9E-64556IPR001471AP2/ERF domain
PRINTSPR003675.9E-689109IPR001471AP2/ERF domain
CDDcd000184.61E-15139192No hitNo description
PfamPF008474.8E-9139181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-9140183IPR001471AP2/ERF domain
SMARTSM003801.8E-7140206IPR001471AP2/ERF domain
PROSITE profilePS5103212.023140215IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-10140185IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAKLSQQNTK NTAINRNNTT NGVTKVKRTR RSVPRDSPPQ RSSIYRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGRQGAY DDEEVAAHAY DLAALKYWGP ETILNFPLST YQNQLKEMEG  120
RSREEYIGSL RRKSSRGVPK YRGVSRHHHN GGWEARIGRV FGNKYLYLGT YATQEEAAAA  180
YGIEHRGLNA DLSRYIKWLK PNQNNSNGSN DLNLPNPMII GTDNSTHPLG LLLQSSKFKE  240
MMEMTAVTDC PPTSSSDLEL TPCSFPEDVQ TYFECQYSSS YGDQGDDMIF GDYNSFMPPM  300
FHSDF*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G179900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018218.11e-170PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN44e-98AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2A4240.0A0A2K2A424_POPTR; Uncharacterized protein
STRINGPOPTR_0006s19360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-89ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]