PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G179800.1

Common Name

POPTR_0006s19350g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 282aa MW: 32672.4 Da PI: 8.2203

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G179800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	82.5	8.5e-26	52	179	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 p+G rF+P+d el+++yL+++ g +e ++ ++d+yk++P++Lp kv+ + + ++y F++ k + +g rk + t +g Wk + Potri.006G179800.1 52 PVGWRFNPSDIELLDYYLRARKYGGGAICEGIFGDFDLYKYDPQNLPqDKVHRHCNgRMYIFTPIYKLHINGARKGKrNTPNGHWKMNSSP 142 79***************9988888777789***********546655555588********99886559******** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +g+++g++ +Lvf+++ + +kt+W+m e+rl Potri.006G179800.1 143 IPIIENnDGQTIGTRSSLVFFDK---DKRKTRWLMYEFRL 179 99878999*******43...3358******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-27	46	203	IPR003441	NAC domain
PROSITE profile	PS51005	31.534	51	204	IPR003441	NAC domain
Pfam	PF02365	3.2E-15	52	179	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MSTPISETSE KNCDVDRAMQ SDGEPRRHDQ VREAFRSLST SANWMDWFKF GPVGWRFNPS 60 DIELLDYYLR ARKYGGGAIC EGIFGDFDLY KYDPQNLPQD KVHRHCNGRM YIFTPIYKLH 120 INGARKGKRN TPNGHWKMNS SPIPIIENND GQTIGTRSSL VFFDKDKRKT RWLMYEFRLV 180 DPPTQTIENE GMLDHCVLAV VYRSKEDRLD TATNKNRWSH DYVAHTIGFD EFNSEPKRCH 240 DQVLSDNKEN HSMEQSHRKR KYAQDIGGTS TSNSNSITNF S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-16	52	179	16	140	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G179800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308423.1	0.0	NAC domain-containing protein 18
TrEMBL	B9HBF6	0.0	B9HBF6_POPTR; Uncharacterized protein
STRING	POPTR_0006s19350.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23203	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.1	3e-19	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Potri.006G179800.1
Entrez Gene	7465980