PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G173600.2
Common NamePOPTR_0006s18760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 340aa    MW: 37285 Da    PI: 7.6171
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G173600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.23.3e-081963338
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.........Ht 38
                        +++C+ ++   +  fC+ ++ +lC +C +++H++         H+
  Potri.006G173600.2 19 AKRCDSCKTAAAAAFCRADSAFLCLNCDTKIHHSgvnskimsrHE 63
                        579******99********************75546666666666 PP
2zf-B_box26.99.8e-0965110342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Potri.006G173600.2  65 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 110
                         689*****************************66899999999986 PP
3CCT69.96.5e-24266309144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Potri.006G173600.2 266 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 309
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6651767IPR000315B-box-type zinc finger
SMARTSM003365.2E-51756IPR000315B-box-type zinc finger
PfamPF006434.8E-62063IPR000315B-box-type zinc finger
CDDcd000214.96E-62167No hitNo description
PROSITE profilePS5011910.8563110IPR000315B-box-type zinc finger
SMARTSM003369.9E-1663110IPR000315B-box-type zinc finger
PfamPF006438.5E-765110IPR000315B-box-type zinc finger
CDDcd000216.24E-966110No hitNo description
PfamPF062035.0E-18266308IPR010402CCT domain
PROSITE profilePS5101716.787266308IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGIEVESLKN LTGGWSVAAK RCDSCKTAAA AAFCRADSAF LCLNCDTKIH HSGVNSKIMS  60
RHERVWMCEV CEQAPAAVTC KADAAALCVT CDADIHSANP LARRHERVPV EPFYDSAESI  120
VKTSSAFNFL TGDMFFCEMD PFLDFEYQNS MDGRYKQSHG GGGAGADSVV PVQNKPAPLP  180
VIDHKNCFDI DFCRSKLTSF SSYPSQSLSH SVSSSSLDVG VVPDGNSMSD ISYPFGRSMN  240
TYTDPSMPIS GSTTNQAAAQ LAGIDREARV LRYREKRKNR KFEKTIRYAS RKAYAETRPR  300
IKGRFAKRTE MESDMDTLYN SPSSVPFLAD THYGVVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.52200.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G173600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247943e-77CU224794.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460543.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-118COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2I4KKP00.0A0A2I4KKP0_POPTR; Co-like family protein
STRINGPOPTR_0006s18760.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-101CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]