PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G155200.1
Common NamePOPTR_0006s16000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 461aa    MW: 50341.1 Da    PI: 7.382
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G155200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31250305156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Potri.006G155200.1 250 KARRCWSPDLHRRFVNALHMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 305
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.491247307IPR017930Myb domain
SuperFamilySSF466893.05E-16247308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28248308IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-26250305IPR006447Myb domain, plants
PfamPF002493.6E-7252303IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSYGHQNDET DKLEEFLSRL EEERLKIDAF KRELPLCMQL  60
LTSAVETSRQ KLQAYRGNQV PIPVLEEFIP LKTSTSETPE KTSNISDKAN WMTTAQLWSQ  120
ESNETKPQTT LTSPILTDIG FNVSSKLILD TKQRNGGAFL PFSKERNLCP SPTLALAACT  180
DEHLELDHKR FSETENGFSC PKRESSGKKM VVIEQGKGAG NSSSSDGQAT NTATIASAST  240
NTSTSQTHRK ARRCWSPDLH RRFVNALHML GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ  300
KYRLHTRRPS PSPHAAGAPA PHLVVLGSIW VPPEYATAAA AAHSGGAALY GAHPASHAPP  360
PHFCATPPAS QDFYTAAAAP PPSLHHHTLH HQLQLFRPTS QVHSSPESDF RGSRDRSESI  420
EDGKSESSSW KGESGENDGG ERKGRAGLRE EGEESHGSKF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G155200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308314.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-127EFM_ARATH; Myb family transcription factor EFM
TrEMBLB9H9930.0B9H993_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Representative plantOGRP43031624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.18e-87G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]