PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G152700.6 | ||||||||
Common Name | POPTR_0006s15740g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 34225.7 Da PI: 6.7958 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.4 | 5.5e-10 | 3 | 37 | 96 | 128 |
NAM 96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +g+++g+kk+Lv+y g+++++ekt+Wvmh+y+l Potri.006G152700.6 3 NGKQKGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 37 67899*********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.644 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-12 | 3 | 56 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVNGKQKGCK KILVLYTNFG KNRRPEKTNW VMHQYHLGQH EEEKEGELVV SKIFYQTQPR 60 QCNYTDRSAT LGEGSGDPSS RRDSGSGSCS SKEIIPQRDE ISGTGPVAAS ISSCTALDIH 120 QLKSDHFGFT PFRKSFDEVG IREASVAREA SASGTCDEIQ EQHQRPHHVA HDPHQQQQLQ 180 HHHHHQTVHH QIATAAFHIS RPSHPISTII SPSPLHHTSI ILDEDPYHVS RLMLQNEIQQ 240 QQHQQQQQHH KLGGRSASGL EELIMGCTST DVKEESPITN PQEAEWLKYS SFWPDPDNQD 300 HHG* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G152700.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970795 | 0.0 | AB970795.1 Populus tremula x Populus tremuloides PtxtNAC128 mRNA for NAC transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308301.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_024458407.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_024458409.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Swissprot | Q9M0F8 | 2e-87 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | B9H8X7 | 0.0 | B9H8X7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s15740.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 2e-67 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G152700.6 |
Entrez Gene | 7484678 |
Publications ? help Back to Top | |||
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