PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G148200.1
Common NamePOPTR_0006s15050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 431aa    MW: 48496.8 Da    PI: 5.3989
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G148200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.5e-34821732102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk++e++ d+e++e++sw +n +sfvv+d++ef+k++LpkyFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+  kk+
  Potri.006G148200.1  82 FLKKTFEMVGDPETDETVSWGKNRDSFVVWDSHEFSKNLLPKYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFHGAKKH 163
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+++
  Potri.006G148200.1 164 LLKTIKRRSR 173
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.2E-5478171IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-3378171IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-3678171IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.4E-1882105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3082171IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-18120132IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340121145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-18133145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MNTREMQKAA AVLEVEEEKR IKATAVTVKE EDDDGVDSLN ELKGGGGGGN NKNNNGISSS  60
SCSSVDLPKP MEGLHEAGPP PFLKKTFEMV GDPETDETVS WGKNRDSFVV WDSHEFSKNL  120
LPKYFKHSNF SSFIRQLNTY GFRKIDPDRW EFANEGFHGA KKHLLKTIKR RSRYNKQQSG  180
AVTGVNDSTK PRLEAELENL KDDQDVLRLE ILKIRQKQQE SQTQLSAVEE RIQAAECKQL  240
QMFIFFTKAA RNPGFIQQLI QKRKQKGKVD GIEFCKKRRL LQTHLPESFP AAVDTNQSVH  300
FKNHAQEQLA TMQTEITEIL TEDVETCQML KVFPAPMSDG FCCPILQDHN ANIMCEKSTQ  360
DMSSAYNLMS EKLLDDGSVI EDLVDEEVDV NDSKLYLELE DLIGMPRMWG GFATELVGHT  420
AGCVGSIPRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-216317110129Heat shock factor protein 1
5d5v_B2e-216317110129Heat shock factor protein 1
5d5v_D2e-216317110129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170LKTIKRR
2261278KRKQKGKVDGIEFCKKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G148200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140030.0KP014003.1 Populus simonii heat shock transcription factor A9 (HsfA9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309214.30.0heat shock factor protein HSF30
SwissprotP411524e-82HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A3N7F4G60.0A0A3N7F4G6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Representative plantOGRP1180756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-83heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]