PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G143200.1 | ||||||||
Common Name | POPTR_0006s14560g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 386aa MW: 42986 Da PI: 9.1026 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.6 | 6.2e-25 | 79 | 122 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e Potri.006G143200.1 79 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 122 79***************************************997 PP | |||||||
2 | QLQ | 59.7 | 8.2e-21 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+ Potri.006G143200.1 10 PFTASQWQELEHQALIYKYMVSGIPIPPDLLFTIK 44 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.1E-12 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-15 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.741 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.888 | 79 | 123 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 80 | 122 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MIMSGGNRFP FTASQWQELE HQALIYKYMV SGIPIPPDLL FTIKRSGCLD SSLSSKLFPR 60 QPPHFSWGCF QMGLGRKIDP EPGRCRRTDG KKWRCSKEAY PDSKYCEKHM HRGKNRSRKP 120 VEVATQSITA PTVSSMTRNH SNNSLLTTSP TSLSLLSPKT HHQNHLHYPA PAGYHAHPNH 180 QFLSSSRPLG IGLSPHENPT HLLLDSGGSS LANTDYRNRN VYGLKEEVDE HAFFSEPSGS 240 MRSLSGSSLD DAWQLTPLTM NSSPSTTNSS KQRSLSSLHN EYSYLQLQSL SDPDTPKQQK 300 QCQHNYLLGS SDVDSLGPIK MEKEKSQKTV HRFFDEWPPK DKDSWLDLDD KSSKSASVSA 360 TGLSISIPSS HDFLPIFSSR TNNGG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.14421 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G143200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182662 | 1e-145 | AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381639.2 | 0.0 | growth-regulating factor 1 isoform X2 | ||||
TrEMBL | A0A2K2A2B4 | 0.0 | A0A2K2A2B4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s14560.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 8e-58 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G143200.1 |
Entrez Gene | 18100351 |