PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G138900.1
Common NamePOPTR_0006s14110g, RAP2L14
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 155aa    MW: 17213.4 Da    PI: 9.5634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G138900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.5e-211464256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr +k +g+WvAeIr p++   r r++lg++ taeeAa+a++aa ++l+g+
  Potri.006G138900.1 14 RYRGVRMRK-WGKWVAEIRQPNS---RNRIWLGSYNTAEEAARAYDAAVLCLRGP 64
                        7******99.**********943...49************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-361477IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-231472IPR016177DNA-binding domain
PfamPF008471.7E-141463IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-321472IPR001471AP2/ERF domain
PROSITE profilePS5103223.4591471IPR001471AP2/ERF domain
CDDcd000182.71E-291571No hitNo description
PRINTSPR003671.4E-101526IPR001471AP2/ERF domain
PRINTSPR003671.4E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVRERRERRV HNRRYRGVRM RKWGKWVAEI RQPNSRNRIW LGSYNTAEEA ARAYDAAVLC  60
LRGPSATFNF PSNVPEIPAT TEIMPPAQIR EVAFRHARRG STLEAAERIV ESGLFEGPSG  120
MSGEVYLGGE GDGAENLEGV SSGVCYQTSG VWTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1614711472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G138900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559550.0EF155955.1 Populus trichocarpa RAP2-like protein (RAP2L14) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381588.11e-109ethylene-responsive transcription factor ERF016
SwissprotQ9C5914e-32ERF16_ARATH; Ethylene-responsive transcription factor ERF016
SwissprotQ9S7L53e-32ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A3N7F6D81e-108A0A3N7F6D8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14110.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15296813
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-22ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]