PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G138800.1 | ||||||||
Common Name | POPTR_0006s14100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23414.1 Da PI: 4.6476 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.4e-18 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGVr +k +g+Wv+eIr p++ r r++lg++++ae+Aa+a +aa +l+g Potri.006G138800.1 16 SKFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 66 79*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-11 | 16 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.64E-29 | 16 | 76 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-20 | 16 | 75 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.733 | 17 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 17 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-33 | 17 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVKHSVEKPV AERSDSKFKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDSA EKAARAFDAA 60 LFCLRGRVAK FNFPENPPNI AGGRSLSPAE IQEAAARFAN SEPQRSQPDR FETDQSVSLS 120 ESRAESPCPS VVSDGTVQME GGELMWDGPF LDMLMNTGSC NHSTEYGIFQ GFDDLYSDFF 180 PPSLIPNLDY GEETNLDGVL EQGSFLWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 16 | 75 | 13 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 24 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G138800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155952 | 0.0 | EF155952.1 Populus trichocarpa RAP2-like protein (RAP2L11) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458985.1 | 1e-154 | ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q84QC2 | 6e-60 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A2K2A231 | 1e-153 | A0A2K2A231_POPTR; ERF family protein | ||||
STRING | POPTR_0006s14100.1 | 1e-153 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-62 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G138800.1 |
Entrez Gene | 18100303 |
Publications ? help Back to Top | |||
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