PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G138700.1
Common NamePOPTR_0006s14090g, RAP2L12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 202aa    MW: 22245.6 Da    PI: 4.9338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G138700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-181667156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        s+ykGVr +k +grWv+eIr p++   r r++lg++++ae+Aa a +aa  +l+g+
  Potri.006G138700.1 16 SKYKGVRKRK-WGRWVSEIRLPNS---RERIWLGSYDSAEKAAHAFDAALFCLRGN 67
                        89*****999.**********933...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-251676No hitNo description
SuperFamilySSF541711.24E-191675IPR016177DNA-binding domain
PfamPF008471.7E-111666IPR001471AP2/ERF domain
SMARTSM003801.5E-281780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-271775IPR001471AP2/ERF domain
PROSITE profilePS5103220.9951774IPR001471AP2/ERF domain
PRINTSPR003671.0E-81829IPR001471AP2/ERF domain
PRINTSPR003671.0E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVKFNTEKPV AERSDSKYKG VRKRKWGRWV SEIRLPNSRE RIWLGSYDSA EKAAHAFDAA  60
LFCLRGNTMK FNFSENPPNI AGGGSLSPSE IQEAAARFAN SEPQRGQSGK LEADQSTSVS  120
ESRPESPCLS AASDGTVRDM PFFDMAMSTS SSNHPTEYGI FPGFDDLHSG FFAPSFLPNL  180
DHGEGFNLDG VLEEDSFLWN F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1317731471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G138700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559530.0EF155953.1 Populus trichocarpa RAP2-like protein (RAP2L12) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381586.11e-148ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-54ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA9PLA21e-146A9PLA2_POPTR; RAP2-like protein
STRINGPOPTR_0006s14090.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]