PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G133200.2
Common NamePOPTR_0006s13550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 360aa    MW: 39932.7 Da    PI: 8.1231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G133200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.1e-3380136360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Potri.006G133200.2  80 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 136
                         9***************************************.***************85 PP
2WRKY103.98.9e-33278335259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK vkg+++prsYYrCts +C+v+k+ver ++dp+++++tYeg+Hnhe
  Potri.006G133200.2 278 GDGFRWRKYGQKIVKGNPYPRSYYRCTSIKCNVRKHVERVSDDPRAFITTYEGKHNHE 335
                         5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2967137IPR003657WRKY domain
SuperFamilySSF1182906.67E-2677137IPR003657WRKY domain
SMARTSM007741.8E-3678136IPR003657WRKY domain
PROSITE profilePS5081123.61780137IPR003657WRKY domain
PfamPF031062.5E-2580134IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-34262337IPR003657WRKY domain
SuperFamilySSF1182901.29E-28271337IPR003657WRKY domain
PROSITE profilePS5081134.991272337IPR003657WRKY domain
SMARTSM007743.3E-37277336IPR003657WRKY domain
PfamPF031067.4E-26279335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGNFNTNSQQ MLQPVETRPQ LSKQDKHNFS SQLTSNLHQN IPSPAEADHT TEPLRLTSLN  60
QEEDPKTLSH ASNGDRPSYD GYNWRKYGQK QVKGSEYPRS YYKCTYPNCP VKKKVERSFD  120
GQIAEIVYKG EHNHSKPQPP KRNSSGTQGL SDGNAPDRNS IPLWSNQLNE RNEGSEGREE  180
NQNEIGLPVH SIYQGKAPPS YDPAGTGTIN AGTGTSDNSC GVSGECDDGS KGLEGANDEP  240
KSKRRKTEIQ STEGGMSGEG VQEPRVVVQS STDSEILGDG FRWRKYGQKI VKGNPYPRSY  300
YRCTSIKCNV RKHVERVSDD PRAFITTYEG KHNHEIPLKS TNLAAFEPDS QAPTTRVKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-3280337877Probable WRKY transcription factor 4
2lex_A7e-3280337877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118960.0bud| catkin
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G133200.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796080.0EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381519.10.0WRKY transcription factor 44
RefseqXP_024459754.10.0WRKY transcription factor 44
RefseqXP_024459755.10.0WRKY transcription factor 44
RefseqXP_024459756.10.0WRKY transcription factor 44
RefseqXP_024459758.10.0WRKY transcription factor 44
RefseqXP_024459759.10.0WRKY transcription factor 44
SwissprotQ9ZUU02e-84WRK44_ARATH; WRKY transcription factor 44
TrEMBLU5GAH70.0U5GAH7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.25e-81WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]