PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G130200.1 | ||||||||
Common Name | POPTR_0006s13230g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 89aa MW: 9778.54 Da PI: 10.1892 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 138.2 | 1.8e-43 | 23 | 88 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e kGlnPGlivllv+gglll+fl+gny+ly yaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe Potri.006G130200.1 23 DAEPKGLNPGLIVLLVIGGLLLTFLIGNYVLYSYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 88 5799*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.6E-40 | 24 | 88 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MEDDFEFSNS PPSFQNMGDL IKDAEPKGLN PGLIVLLVIG GLLLTFLIGN YVLYSYAQKT 60 LPPRKKKPIS KKKMKKERLK QGVSAPGE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.2872 | 1e-138 | bud| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G130200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144560 | 1e-147 | EF144560.1 Populus trichocarpa clone WS01110_K04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381480.1 | 5e-57 | DNA-binding protein S1FA | ||||
Swissprot | Q42337 | 3e-16 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A9P8U4 | 1e-55 | A9P8U4_POPTR; S1Fa-like family protein | ||||
STRING | POPTR_0006s13230.1 | 2e-56 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 | Representative plant | OGRP5095 | 13 | 22 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G130200.1 |
Entrez Gene | 18100218 |
Publications ? help Back to Top | |||
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