PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G126300.5 | ||||||||
Common Name | POPTR_0006s12820g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 550aa MW: 61640.4 Da PI: 9.5341 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 445 | 492 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WTt E +l+d+++q+G+g+W+ I + m Rt+ +++++w+++l Potri.006G126300.5 445 WTTPEVMKLIDGIAQYGTGRWTDIKKLMFsstAYRTPIDLRDKWRNLL 492 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 434 | 495 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.882 | 437 | 496 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-8 | 441 | 494 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.87E-16 | 443 | 493 | No hit | No description |
SuperFamily | SSF46689 | 2.62E-16 | 443 | 517 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-7 | 445 | 492 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MPRMDGLDRE AHFPKKFASM KCQRVKVDDS FAPALEDEAI EVQHLVAEPK TDHVSVDGVL 60 CLGKENSSKC SETDGFSYGF NDGMRKNIGG LHSNITQGPD DLDLGVLDGF LDEVDEVDDI 120 HAANDFSGAY EDFILDIELA EKVSYLDYTP RGGSRLRNSS SESQSPGCSG SSNGAVGMSE 180 SSTATIPKFE SKNGWHQKTV KCKLRCSSGD KWNSQEPGED SMCPTSDDIE DLDELDDDAK 240 PLISLVSGKN AKKVVQAAKA GTSVRQKRLR KPTKRYIEEL SDPKAKHVME RKSDLSATLK 300 DKRPKIRSHD ELHSGGALTC TPKEPFSENI TQATSKGTDE PLHLRSKPVS ERRTNPSFIS 360 KGRRWSIRSQ NEPYQVRAVK FAPKELSLTG PSAQAPFESR PRRGRPKKSL PLSFLESEDD 420 ESEDDCVKKR TCKKSNDRRK HQRMWTTPEV MKLIDGIAQY GTGRWTDIKK LMFSSTAYRT 480 PIDLRDKWRN LLRASGAQKR KSNKKEVKEK LKDVVRSLPS SVFRRVRELA SLHPYPRFSP 540 GGRYIRRKN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1336 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G126300.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU231220 | 0.0 | CU231220.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381433.1 | 0.0 | uncharacterized protein LOC18100175 | ||||
Refseq | XP_006381434.1 | 0.0 | uncharacterized protein LOC18100175 | ||||
Refseq | XP_006381436.2 | 0.0 | uncharacterized protein LOC18100175 | ||||
Refseq | XP_024459622.1 | 0.0 | uncharacterized protein LOC18100175 | ||||
TrEMBL | U5GCT1 | 0.0 | U5GCT1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12820.2 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 3e-22 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G126300.5 |
Entrez Gene | 18100175 |