PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G126300.4
Common NamePOPTR_0006s12820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 550aa    MW: 61640.4 Da    PI: 9.5341
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G126300.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09445492448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WTt E  +l+d+++q+G+g+W+ I + m      Rt+ +++++w+++l
  Potri.006G126300.4 445 WTTPEVMKLIDGIAQYGTGRWTDIKKLMFsstAYRTPIDLRDKWRNLL 492
                         ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-12434495IPR009057Homeodomain-like
PROSITE profilePS5129412.882437496IPR017930Myb domain
SMARTSM007171.9E-8441494IPR001005SANT/Myb domain
CDDcd116603.87E-16443493No hitNo description
SuperFamilySSF466892.62E-16443517IPR009057Homeodomain-like
PfamPF002493.3E-7445492IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MPRMDGLDRE AHFPKKFASM KCQRVKVDDS FAPALEDEAI EVQHLVAEPK TDHVSVDGVL  60
CLGKENSSKC SETDGFSYGF NDGMRKNIGG LHSNITQGPD DLDLGVLDGF LDEVDEVDDI  120
HAANDFSGAY EDFILDIELA EKVSYLDYTP RGGSRLRNSS SESQSPGCSG SSNGAVGMSE  180
SSTATIPKFE SKNGWHQKTV KCKLRCSSGD KWNSQEPGED SMCPTSDDIE DLDELDDDAK  240
PLISLVSGKN AKKVVQAAKA GTSVRQKRLR KPTKRYIEEL SDPKAKHVME RKSDLSATLK  300
DKRPKIRSHD ELHSGGALTC TPKEPFSENI TQATSKGTDE PLHLRSKPVS ERRTNPSFIS  360
KGRRWSIRSQ NEPYQVRAVK FAPKELSLTG PSAQAPFESR PRRGRPKKSL PLSFLESEDD  420
ESEDDCVKKR TCKKSNDRRK HQRMWTTPEV MKLIDGIAQY GTGRWTDIKK LMFSSTAYRT  480
PIDLRDKWRN LLRASGAQKR KSNKKEVKEK LKDVVRSLPS SVFRRVRELA SLHPYPRFSP  540
GGRYIRRKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.13360.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G126300.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2312200.0CU231220.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381433.10.0uncharacterized protein LOC18100175
RefseqXP_006381434.10.0uncharacterized protein LOC18100175
RefseqXP_006381436.20.0uncharacterized protein LOC18100175
RefseqXP_024459622.10.0uncharacterized protein LOC18100175
TrEMBLU5GCT10.0U5GCT1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12820.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-22TRF-like 6