PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G125800.1 | ||||||||
Common Name | POPTR_0006s12770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 199aa MW: 21323.8 Da PI: 7.0328 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.4 | 2.6e-34 | 52 | 119 | 6 | 73 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++++++hTkv+gR+RRvR++a++aar+F+L++eLG+ +d++tieWLl++a+++i+++tgt+++++ Potri.006G125800.1 52 SQSKDRHTKVNGRGRRVRMPALTAARVFQLTRELGHRSDGETIEWLLRNAEASIIAATGTGTIPSIPI 119 678*********************************************************99998443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-29 | 53 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.994 | 54 | 108 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVLYNLSSTS NNHHHQQNSN LNNNNHVVPT TIPAASSGSD SKLAHPRKST ASQSKDRHTK 60 VNGRGRRVRM PALTAARVFQ LTRELGHRSD GETIEWLLRN AEASIIAATG TGTIPSIPIS 120 TTVGSAPTSA SPLSVSGEVH PAIDAGPDGF SLTEASCRLD LDYRHMPFTA LLLKPLSENV 180 DLEAEEGRQE EVIGEQKM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3781 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G125800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381427.2 | 1e-145 | transcription factor TCP11 | ||||
TrEMBL | A0A2K2A187 | 1e-143 | A0A2K2A187_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12770.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-31 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G125800.1 |
Entrez Gene | 18100170 |