PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G117700.1 | ||||||||
Common Name | POPTR_0006s11890g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 27132.5 Da PI: 8.811 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Potri.006G117700.1 71 KKKRLTSDQLESLEKSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 124 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.3 | 4.1e-38 | 70 | 161 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+ Lk+++d++++e+++L++ev +L++ + Potri.006G117700.1 70 EKKKRLTSDQLESLEKSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDNLKQEFDSVSKEKQKLQEEVMKLKAVV 160 69*************************************************************************************9877 PP HD-ZIP_I/II 92 k 92 + Potri.006G117700.1 161 R 161 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-19 | 65 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 69 | 130 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.8E-17 | 71 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.10E-15 | 71 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-21 | 76 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.1E-5 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.1E-5 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-8 | 126 | 159 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MNMDNMDWNG NFRSFVSRPD QTSFNFLYNY AYDPQYPGMD MKHPAILAEN APNRFVPTAL 60 DKITSYESQE KKKRLTSDQL ESLEKSFQEE IKLDPDRKMK LSRELGLQPR QIAVWFQNRR 120 ARWKAKQLER LYDNLKQEFD SVSKEKQKLQ EEVMKLKAVV REQATRKQVS TAGYTEISGE 180 ETVESTSVAA ASRKLRGHSH HQNNAEHCNY LLNVDEYNPV SSPYWALLPS YP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARWKAKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G117700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381334.1 | 1e-175 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 6e-56 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | U5GA01 | 1e-173 | U5GA01_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s11890.1 | 1e-174 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-58 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G117700.1 |
Entrez Gene | 18100087 |
Publications ? help Back to Top | |||
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