PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G117300.2
Common NamePOPTR_0006s11850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 469aa    MW: 51307.6 Da    PI: 6.7459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G117300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.62.5e-16108189186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L++a+ e+ ++l+rg+l++ +Weev++ ++++   +s +qCk+k +nl+kryk ++++   + s s+s++p+f+++e
  Potri.006G117300.2 108 EWSDVAIGCLLDAYMEKFTQLSRGNLRGRDWEEVAAMVKQG---KSVEQCKNKVDNLKKRYKLERHRITTG-SISTSHWPWFQKME 189
                         5***********************************99997...699**********************99.677779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-17106191No hitNo description
Gene3DG3DSA:3.40.1160.104.7E-59241460IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536333.93E-45252460IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042545.04E-104254460No hitNo description
PfamPF006962.3E-21255461IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MASSCDEDFS LLGDDNHHHH IIHHPYRYPT KSTPIHAPPE SVLPLDGEED RQDNNETDSA  60
FADVNPYSDN ETSKRSEREG EIDGGETPYN IYKRGRSGGG EYRKDREEWS DVAIGCLLDA  120
YMEKFTQLSR GNLRGRDWEE VAAMVKQGKS VEQCKNKVDN LKKRYKLERH RITTGSISTS  180
HWPWFQKMED IVGNSLTIKV APPAPAPADE DNGGGGASSA SVSRQSKRYA NTIASPAGQT  240
NNMMPKSISK TRWRRVILKI SGVALAGTGP NNIDPKVMTL IAREVAMACQ LGLEIAIVVG  300
ARNFFCGNTW VTATGSHRRT AYQIGMMASV MNSLLLQSAL EKTGIQTRVQ TAFAMQEVSE  360
PYSRQRAIRH LEKGRVVIFG GIGAGTGNPL FSTDTAAAVQ ASEIHAEAVL KGTNVDGVYD  420
CHSPDSNFIF EHISIRDLVS RGATSMDMTA LTFCEENNIP GCCGLQPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-502474603214Uridylate kinase
3ek5_B2e-502474603214Uridylate kinase
3ek5_C2e-502474603214Uridylate kinase
3ek5_D2e-502474603214Uridylate kinase
3ek5_E2e-502474603214Uridylate kinase
3ek5_F2e-502474603214Uridylate kinase
3ek6_A2e-502474603214Uridylate kinase
3ek6_B2e-502474603214Uridylate kinase
3ek6_C2e-502474603214Uridylate kinase
3ek6_D2e-502474603214Uridylate kinase
3ek6_E2e-502474603214Uridylate kinase
3ek6_F2e-502474603214Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G117300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460244.10.0uncharacterized protein LOC18100083 isoform X2
TrEMBLA0A2K2A0R10.0A0A2K2A0R1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11850.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.20.0Trihelix family protein