PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G117300.1
Common NamePOPTR_0006s11850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 493aa    MW: 53875.5 Da    PI: 6.6283
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G117300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.7e-16108189186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L++a+ e+ ++l+rg+l++ +Weev++ ++++   +s +qCk+k +nl+kryk ++++   + s s+s++p+f+++e
  Potri.006G117300.1 108 EWSDVAIGCLLDAYMEKFTQLSRGNLRGRDWEEVAAMVKQG---KSVEQCKNKVDNLKKRYKLERHRITTG-SISTSHWPWFQKME 189
                         5***********************************99997...699**********************99.677779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-17106191No hitNo description
Gene3DG3DSA:3.40.1160.101.3E-70241485IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.673251486IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.36E-55252485IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.69E-119254486No hitNo description
PfamPF006961.2E-23255465IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MASSCDEDFS LLGDDNHHHH IIHHPYRYPT KSTPIHAPPE SVLPLDGEED RQDNNETDSA  60
FADVNPYSDN ETSKRSEREG EIDGGETPYN IYKRGRSGGG EYRKDREEWS DVAIGCLLDA  120
YMEKFTQLSR GNLRGRDWEE VAAMVKQGKS VEQCKNKVDN LKKRYKLERH RITTGSISTS  180
HWPWFQKMED IVGNSLTIKV APPAPAPADE DNGGGGASSA SVSRQSKRYA NTIASPAGQT  240
NNMMPKSISK TRWRRVILKI SGVALAGTGP NNIDPKVMTL IAREVAMACQ LGLEIAIVVG  300
ARNFFCGNTW VTATGSHRRT AYQIGMMASV MNSLLLQSAL EKTGIQTRVQ TAFAMQEVSE  360
PYSRQRAIRH LEKGRVVIFG GIGAGTGNPL FSTDTAAAVQ ASEIHAEAVL KGTNVDGVYD  420
CHSPDSNFIF EHISIRDLVS RGATSMDMTA LTFCEENNIP VVVFNLLEPG NISKALCGEQ  480
VGTLIDQTGR IG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-582474853239Uridylate kinase
3ek5_B1e-582474853239Uridylate kinase
3ek5_C1e-582474853239Uridylate kinase
3ek5_D1e-582474853239Uridylate kinase
3ek5_E1e-582474853239Uridylate kinase
3ek5_F1e-582474853239Uridylate kinase
3ek6_A1e-582474853239Uridylate kinase
3ek6_B1e-582474853239Uridylate kinase
3ek6_C1e-582474853239Uridylate kinase
3ek6_D1e-582474853239Uridylate kinase
3ek6_E1e-582474853239Uridylate kinase
3ek6_F1e-582474853239Uridylate kinase
3nwy_A3e-5825348550279Uridylate kinase
3nwy_B3e-5825348550279Uridylate kinase
3nwy_C3e-5825348550279Uridylate kinase
3nwy_D3e-5825348550279Uridylate kinase
3nwy_E3e-5825348550279Uridylate kinase
3nwy_F3e-5825348550279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G117300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381330.10.0uncharacterized protein LOC18100083 isoform X1
TrEMBLU5GCJ80.0U5GCJ8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein