PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G116500.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 272aa MW: 29675.7 Da PI: 5.2879 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 245 | 268 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H Potri.006G116500.4 245 FSCNSCNRSFGSENALQSHSKAkH 268 89*****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0065 | 245 | 268 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 245 | 271 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 247 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEFWGVEVKG GEPLRVESGD GFILHLSQAC LGEAKKDKGN ESVCLFVNFD DQKLVLGTLS 60 HEKIPQIPFD LVFEKDFELS HNLKNGSVFF SGYKVAQPEY PFTQINFISD GEEDLPVPVD 120 NGKEEAKQPK PENENAAKPD SKQKVKIVEP NKDGKPKPEN DDSSDEEDDS SDDGESSDDQ 180 AEVGKKRSAE SASKNPVPDK KAKFVTPQKT DLKKAGVHIA TPHPSKQAAK TSANSQRKEQ 240 AQKSFSCNSC NRSFGSENAL QSHSKAKHSA A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.17016 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G116500.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145859 | 0.0 | EF145859.1 Populus trichocarpa clone WS0113_M22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381322.1 | 1e-165 | histone deacetylase HDT1 | ||||
Swissprot | Q6V9I6 | 5e-81 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | A9PC74 | 1e-164 | A9PC74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s11770.1 | 1e-164 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 1e-31 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G116500.4 |
Publications ? help Back to Top | |||
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