PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G116500.3
Common NamePOPTR_0006s11770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 301aa    MW: 32793.5 Da    PI: 4.3218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G116500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013274297123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ C++sF +   L++H +  H
  Potri.006G116500.3 274 FSCNSCNRSFGSENALQSHSKAkH 297
                         89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0065274297IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635274300IPR007087Zinc finger, C2H2
PROSITE patternPS000280276297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEFWGVEVKG GEPLRVESGD GFILHLSQAC LGEAKKDKGN ESVCLFVNFD DQKLVLGTLS  60
HEKIPQIPFD LVFEKDFELS HNLKNGSVFF SGYKVAQPES DSDEFISDGE EDLPVPVDNG  120
KEEAKQPKPE NENAAKPDSK QKVKIVEPNK DGKPKPENDD SSDEEDDSSD DGESSDDQAM  180
MMANDEDESS EDEDDESDED DDDSDDGDVK PPKKAEVGKK RSAESASKNP VPDKKAKFVT  240
PQKTGVHIAT PHPSKQAAKT SANSQRKEQA QKSFSCNSCN RSFGSENALQ SHSKAKHSAA  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.170160.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G116500.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1458590.0EF145859.1 Populus trichocarpa clone WS0113_M22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381322.10.0histone deacetylase HDT1
SwissprotQ6V9I62e-75HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLU5GA560.0U5GA56_POPTR; C2H2 family protein
STRINGPOPTR_0006s11770.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-32histone deacetylase 2C
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]