PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G115200.1

Common Name

POPTR_0006s11630g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRF

Protein Properties

Length: 378aa MW: 41999.5 Da PI: 7.7465

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G115200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.3	8.8e-26	150	194	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErHlhrgr+rsrk++e+ Potri.006G115200.1 150 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHLHRGRNRSRKPVEN 194 79****************************************997 PP
2	QLQ	47.1	7.5e-17	80	115	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ +Q+q+L+ Q+l+y+ ++a++ +PpeLlq+i+k Potri.006G115200.1 80 YFSLEQWQELELQALIYRFMLAGAAIPPELLQPIKK 115 6*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	9.1E-10	79	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.814	80	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.7E-13	80	113	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.138	150	194	IPR014977	WRC domain
Pfam	PF08879	8.0E-22	151	193	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MDFHLKQWRN QHEESGQQPS AKMPKLLMDP HQPQQHPHSS GSAAFPLFLP EPSCKNSNLS 60 AFPDSNTAAN TRLPKIMGNY FSLEQWQELE LQALIYRFML AGAAIPPELL QPIKKTLLHS 120 HPPPYFLHHP LQLHCSYYQP SWYWGRAAMD PEPGRCRRTD GKKWRCSRDV VAGHKYCERH 180 LHRGRNRSRK PVENPTPTIS TNITCIGIGE LDQTTFSLFC FCFNLLAHPY CSSKTESKGL 240 IGPPPPNEVG NRSDGHILWH FFDDWPRSVD ESDNMNAGSS MNSLTCLSVS MPGNSPASDV 300 SLKLSTGNNI AEEEPEPVPA PIPRGNTSNW AAAGWGTKIT NQVVTSMGGP LAEALRSSTT 360 KLISHECSAP VMSPHCF*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MDFHLKQWRN QHEESGQQPS AKMPKLLMDP HQPQQHPHSS GSAAFPLFLP EPSCKNSNLS  60
AFPDSNTAAN TRLPKIMGNY FSLEQWQELE LQALIYRFML AGAAIPPELL QPIKKTLLHS  120
HPPPYFLHHP LQLHCSYYQP SWYWGRAAMD PEPGRCRRTD GKKWRCSRDV VAGHKYCERH  180
LHRGRNRSRK PVENPTPTIS TNITCIGIGE LDQTTFSLFC FCFNLLAHPY CSSKTESKGL  240
IGPPPPNEVG NRSDGHILWH FFDDWPRSVD ESDNMNAGSS MNSLTCLSVS MPGNSPASDV  300
SLKLSTGNNI AEEEPEPVPA PIPRGNTSNW AAAGWGTKIT NQVVTSMGGP LAEALRSSTT  360
KLISHECSAP VMSPHCF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G115200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024458787.1	0.0	growth-regulating factor 4 isoform X2
Swissprot	Q8L8A7	4e-87	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	B9MTP8	0.0	B9MTP8_POPTR; Uncharacterized protein
STRING	POPTR_0006s11630.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7895	32	42
Representative plant	OGRP9959	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-81	growth-regulating factor 4

Link Out ? help Back to Top
Phytozome	Potri.006G115200.1
Entrez Gene	18100062

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]