PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G109100.1
Common NamePOPTR_0006s10950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 334aa    MW: 37687.5 Da    PI: 6.5057
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G109100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.72.7e-24133193259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqK++ +++fpr+YYrCt++   +C+++k+v+r +e+p +  +tY+g H+++
  Potri.006G109100.1 133 DDGHAWRKYGQKMILNAKFPRNYYRCTHKfdqHCQATKQVQRVEEEPPLYRTTYHGYHTCK 193
                         8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-25118193IPR003657WRKY domain
PROSITE profilePS5081119.749127190IPR003657WRKY domain
SuperFamilySSF1182902.35E-24127193IPR003657WRKY domain
SMARTSM007741.3E-35132194IPR003657WRKY domain
PfamPF031062.0E-23133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MESSWPENLP SHRKKVIDEL LRGQEIAKKL KFVMSKSTGD DGSMSAENLV REIMNSFNST  60
LSILNGGGYD DDVSQTPATT KVCSPLWDGR KSSEDSGESS KSTATVKVKD RRGCYKRRRS  120
SHSWTNETST LTDDGHAWRK YGQKMILNAK FPRNYYRCTH KFDQHCQATK QVQRVEEEPP  180
LYRTTYHGYH TCKNLLKASD QFVLDPIDHF HTDSSTLLSF NNSSNHHQMM TNKQNHPFFT  240
TSFQSIKQEY YNKEDNDMPG YDPTIHNNQA LSSDYLLPTD DHDRISTFDH GDLISGVNSS  300
CTTSSHSLDI DSIMAESVGF GDGGDVLGFE FCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21133193969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G109100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0281560.0CT028156.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309186.30.0probable WRKY transcription factor 70
TrEMBLA0A2K2A0860.0A0A2K2A086_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-36WRKY DNA-binding protein 70