PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G105300.1
Common NamePOPTR_0006s10600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 547aa    MW: 60333.2 Da    PI: 9.0518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G105300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31253310260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +D y+WrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++++ei+Y+g+Hnh+k
  Potri.006G105300.1 253 EDRYKWRKYGQKQVKGSENPRSYYKCTYPNCTTKKKVERSL-DGQITEIVYKGSHNHSK 310
                         7****************************************.***************85 PP
2WRKY104.46.2e-33414472159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+CtsagCpv+k+ver+++d + v++tYeg+Hnh+
  Potri.006G105300.1 414 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCPVRKHVERASHDLRSVITTYEGKHNHD 472
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-26245311IPR003657WRKY domain
SuperFamilySSF1182901.16E-23246311IPR003657WRKY domain
PROSITE profilePS5081122.607247311IPR003657WRKY domain
SMARTSM007741.0E-32252310IPR003657WRKY domain
PfamPF031063.5E-23253308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-36399474IPR003657WRKY domain
SuperFamilySSF1182901.24E-28406474IPR003657WRKY domain
PROSITE profilePS5081138.618409474IPR003657WRKY domain
SMARTSM007741.6E-37414473IPR003657WRKY domain
PfamPF031062.9E-25415472IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MASSASASST TTINSLSNLS LPTQIMTFSS PSFTDLVSGN NKYMDNLSWG LYEYGTNDRN  60
GIEIPNFKSF QPPSLPLSPP PVSPSSYWAI PPRLSPTELL DSPVLFPTSY ALASPTSGFF  120
AGQTFNWRSN SNDNQRGVSG EEKDCSDFSF QTQTRPPTIS SSSSSLFQSS SNSVVVEKSL  180
KRKHEEWKFN QSKQTDFSLD QKTGVKSVSA PVQSFSSELV PLQANMQNST APQPSYNQYN  240
QAGHYMRENG RSEDRYKWRK YGQKQVKGSE NPRSYYKCTY PNCTTKKKVE RSLDGQITEI  300
VYKGSHNHSK PQSTRRSSSQ SVYPSGGANS EISYQSGAPM ESGMMQEDSS ISLGEDDIDH  360
SSPISNSGGE DNENEPDAKR WLGQNENESI LGAGSKTVRE SRIVVQTTSD IDILDDGYRW  420
RKYGQKVVRG NPNPRSYYKC TSAGCPVRKH VERASHDLRS VITTYEGKHN HDVPAARGRG  480
NVNKAPSNAN STANAPIPIR PSVMASHSNQ TRYHPNSLHS TRLLPTSGSQ APFTLQMLQS  540
QGSFEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-36253475878Probable WRKY transcription factor 4
2lex_A6e-36253475878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G105300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458700.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-122WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2K2A0220.0A0A2K2A022_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-112WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]