PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G089500.1
Common NamePOPTR_0006s09020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 165aa    MW: 18133.2 Da    PI: 6.0035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G089500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-053153123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ Fs+   L  H++ H
  Potri.006G089500.1 31 YTCAFCKRGFSNAQALGGHMNIH 53
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-42955IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.99E-62957No hitNo description
PROSITE profilePS5015711.1773158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDISLTSSTG KSDQIVCDSD YLQDSSHVRS YTCAFCKRGF SNAQALGGHM NIHRRDRAKL  60
KQASDENFLS LDITKSTEEI STRAPKTPCA LPVDQHVSFT LRNKASEEVQ PLPFIVDVKA  120
GTDGDEDNKM QLNQATMQAG LDLELRLGSN PHESSTRSSP REFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15361RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G089500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090990.0AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309081.31e-120transcriptional regulator TAC1
TrEMBLA0A2K1ZZ911e-119A0A2K1ZZ91_POPTR; Uncharacterized protein
STRINGPOPTR_0006s09020.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-26C2H2 family protein