PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G087000.1
Common NamePOPTR_0006s08730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 305aa    MW: 34015.4 Da    PI: 5.6053
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G087000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31115171258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         dDgy+WrKYGqK++k+s++prsYYrCt a+C++kk+ver++edp++++itYeg H h
  Potri.006G087000.1 115 DDGYKWRKYGQKSIKNSPHPRSYYRCTNARCSAKKQVERCSEDPDTLVITYEGLHLH 171
                         8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.141109174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-29111171IPR003657WRKY domain
SuperFamilySSF1182901.01E-26112172IPR003657WRKY domain
SMARTSM007745.1E-36114173IPR003657WRKY domain
PfamPF031062.2E-25115171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEEVIKSSTW FDHESEDELV RELLDDESPF FFLPKEKNQS KPSPTNEQTI NQLTSKVYSG  60
PTIQDIENAL STSSREDQSQ AVSQARISLL QKGLSKMENN KYTLKLKRCG DGMADDGYKW  120
RKYGQKSIKN SPHPRSYYRC TNARCSAKKQ VERCSEDPDT LVITYEGLHL HYTYPYFLSN  180
QPQHDDPPSK KPKGTISEAE FQAHATQRAP EQAQEYSAHV TSPGSLPSTS TADDYVHESG  240
LEAIGPQGLL EDVVPYMVRN PSNYNVSSNS SSSSYRSPPA SPPSSLSWSP SHSFFDIALD  300
TSIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-201131711674Probable WRKY transcription factor 4
2lex_A3e-201131711674Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G087000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1273700.0JN127370.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309066.20.0probable WRKY transcription factor 49
TrEMBLB9HBN20.0B9HBN2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-50WRKY DNA-binding protein 49