PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G071600.1 | ||||||||
Common Name | POPTR_0006s07100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24587.5 Da PI: 8.1482 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2.1e-19 | 89 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ +++ LA++l+L+ rqV vWFqNrRa+ k Potri.006G071600.1 89 RKKLRLTKDQSSYLEESFRRHPTLNPAKKHALAEQLNLKPRQVEVWFQNRRARTK 143 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.5 | 4.1e-39 | 89 | 178 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++ LEesF+++ +L+p +K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++l++en+rL++e +eLr++ Potri.006G071600.1 89 RKKLRLTKDQSSYLEESFRRHPTLNPAKKHALAEQLNLKPRQVEVWFQNRRARTKLKQTEADCELLKKCCESLSNENRRLKRELQELRSQ 178 69*************************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-19 | 75 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 87 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 89 | 143 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-16 | 89 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-15 | 89 | 146 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.2E-18 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.2E-9 | 145 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEEEGYCNTR LGLGLGGENY APWPQKQKEK PVVRLDLSFT LCPDQDDSMN IDHHGKAEGT 60 CFKSEEDEDY GNKRSDHSID NSCMYGTGRK KLRLTKDQSS YLEESFRRHP TLNPAKKHAL 120 AEQLNLKPRQ VEVWFQNRRA RTKLKQTEAD CELLKKCCES LSNENRRLKR ELQELRSQKT 180 GRSSSSHSQL AKDLGTITKC PSCEESTTTD QNKM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G071600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308994.1 | 1e-159 | homeobox-leucine zipper protein HAT9 | ||||
Swissprot | P46665 | 5e-48 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | B9HAM6 | 1e-158 | B9HAM6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s07100.1 | 1e-158 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-50 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G071600.1 |
Entrez Gene | 7474711 |