PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G063800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 294aa    MW: 31966.3 Da    PI: 7.6889
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G063800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019109131123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C++ Fs++  L  H++ H
  Potri.006G063800.1 109 FPCNFCKREFSTSQALGGHQNAH 131
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-4104135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-6105136No hitNo description
PfamPF139121.2E-5108133IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.406109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
METVGTERCP SEGSSISATS EGTPHRDGSE LDQTEMVNTN MKEKVVQGSE PALLPKSSAR  60
VLLDLKLSRD NSIRGSKLEF NLLSPMNVGS SHAKESTAET LKQTESRVFP CNFCKREFST  120
SQALGGHQNA HKQERTLAKR RQEMDVGALV HLPYYPYSSL STNPYYGSLN RSLGVRLDSL  180
IHKTSPPYPW TSPIGLRYDA HGGWSGQTTM NTQPSNGKSL TTESLNAFSG GFGISSSSSS  240
SRFEDNLLRN FGSSPSSNTV AINKPPGTDH FQQTDHPKSY QTDDSGLDLS LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G063800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460087.10.0zinc finger protein 3
TrEMBLA0A2K1ZXT90.0A0A2K1ZXT9_POPTR; Uncharacterized protein
STRINGPOPTR_0006s06260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-24C2H2 family protein