PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G057200.2 | ||||||||
Common Name | POPTR_0006s05600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 38473.8 Da PI: 5.5891 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.8e-09 | 187 | 234 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + +k a +L + +++++sLq Potri.006G057200.2 187 SHSLAERARREKINQRMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 234 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-15 | 181 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.74E-9 | 181 | 238 | No hit | No description |
PROSITE profile | PS50888 | 14.672 | 183 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-14 | 183 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 187 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-8 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDLTTASGAR SGPELDETGL DSFQLGEDIR HLITAPSENA SSFIALLELP ANQAVELLHS 60 DSGQKQYPNL TFPSNTSAIF SVFNGGSNST DSSPVPSNSS SKDLEKASAV KCEPLETGSY 120 LDSSHPLVSD PTVDNSAPNA RPSSKRKERE KKVKAASKKS KTESSQQEED MLPYVHVRAR 180 RGQATDSHSL AERARREKIN QRMKLLQELV PGCNKISGTA LVLDEIINHV QSLQCQVEFL 240 SMRLAAVNPR IDFNLDSMLA AESGSLIDSN FPGMVMPLMW PEAEVNGNRH QFQQHWQFDA 300 LHQPIWGREE DSHNFITPEN SLLSYDSSAN SASLNSNQLK MEGRMKLHQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3475 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G057200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458405.1 | 0.0 | transcription factor bHLH48 | ||||
Swissprot | Q3EAI1 | 2e-90 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A2K1ZXD7 | 0.0 | A0A2K1ZXD7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s05600.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-90 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G057200.2 |
Entrez Gene | 18099855 |
Publications ? help Back to Top | |||
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