PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G054500.1
Common NamePOPTR_0006s05320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 287aa    MW: 32512.2 Da    PI: 5.5951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G054500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-202878155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Potri.006G054500.1 28 CDYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAARRLYG 78
                        68*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-132878IPR001471AP2/ERF domain
CDDcd000182.76E-322888No hitNo description
PROSITE profilePS5103222.6292986IPR001471AP2/ERF domain
SMARTSM003805.5E-382992IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-213087IPR016177DNA-binding domain
PRINTSPR003673.4E-103041IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-303087IPR001471AP2/ERF domain
PRINTSPR003673.4E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MENCGKSPLK PWKKGPTRGK GGPQNAMCDY RGVRQRTWGK WVAEIREPKK RARLWLGSFA  60
TAEEAAMAYD EAARRLYGPN AYLNLPHLQS NSSPPNKSHK FKWIPSNNFI SMFPSCGLLN  120
IHAQPSVHVI HQRLQELKNN RPLNQSSVAS SSSSSESRTE VMIVSDENYV ANVSAAEKDE  180
EISSEKMLLT NHDEKPQIDL NEFLQQLGIL KEENQPDNND VDEHFTEPES SHKDQNELTA  240
LADKSFDWDS LIEMHGIADH QGEEFNSFPV YDIQKELAFP TSIWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-193086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G054500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308045.30.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX52e-93DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2K1ZXA50.0A0A2K1ZXA5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-82ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]