PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G051400.1
Common NamePOPTR_0006s04990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 381aa    MW: 42621.4 Da    PI: 4.9575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G051400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.53.4e-332243491126
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         lp G+rF P+d elv+eyL kkv+++ l+  + i+ev+iy+++P  L +k+k   + +w fF++rdkky++g+r++ra+  g+Wk tg++ 
  Potri.006G051400.1 224 LPIGVRFCPNDRELVMEYLMKKVRNEALPK-NRIHEVNIYEYHPAILAEKYKRYAEiHWSFFTTRDKKYPNGTRPSRAVPGGFWKPTGTSA 313
                         699************************999.77**************9666664445*******************************976 PP

                 NAM  91 e.vlskkgelvglkktLvfykgrapkgektdWvmhey 126
                         + v++++++ +  k+ L fy+ + ++g +t+W m ey
  Potri.006G051400.1 314 TcVFDENKNPIASKTPLDFYESKGKDG-RTEWKMLEY 349
                         6266669999**********8888886.9*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS505078.103156IPR007094RNA-directed RNA polymerase, catalytic domain
SuperFamilySSF1019411.83E-37221377IPR003441NAC domain
PROSITE profilePS5100536.665224377IPR003441NAC domain
PfamPF023657.7E-15225349IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001172Biological Processtranscription, RNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0039694Biological Processviral RNA genome replication
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003968Molecular FunctionRNA-directed RNA polymerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEENNGLSGT FINNSMMRLV ANSRGSNNND MQFDANILSN GDSNAIQFDE NILSNAMQFD  60
ANILNNGNSN AMQFDANLLN NGNSNAMRFD ENILSNAMQF DENILSNGNS NVMQFDENIL  120
SNAMQFDANI LSNAMQFDAS ILSHNGNSNA VQFDANILNN GNSNAYISPG SLVDDQFCSP  180
NNAMVMACSS SNLINHSGQP QSQGSSRQVN VDDGDYIDPY FFTLPIGVRF CPNDRELVME  240
YLMKKVRNEA LPKNRIHEVN IYEYHPAILA EKYKRYAEIH WSFFTTRDKK YPNGTRPSRA  300
VPGGFWKPTG TSATCVFDEN KNPIASKTPL DFYESKGKDG RTEWKMLEYF PKCMAIHSSS  360
AGGMRLNDCV LCVIYRKGEK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-2622237715165NO APICAL MERISTEM PROTEIN
1ut4_B4e-2622237715165NO APICAL MERISTEM PROTEIN
1ut7_A4e-2622237715165NO APICAL MERISTEM PROTEIN
1ut7_B4e-2622237715165NO APICAL MERISTEM PROTEIN
4dul_A4e-2622237715165NAC domain-containing protein 19
4dul_B4e-2622237715165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G051400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033356.12e-93PREDICTED: uncharacterized protein LOC105131874
TrEMBLA0A2K1ZX220.0A0A2K1ZX22_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0006s04990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3925422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.26e-33NAC domain containing protein 47